PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G010800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 598aa    MW: 64926.1 Da    PI: 9.8465
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G010800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.53.1e-2421479127
                 NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atgkdkevlsk 95 
                         P+deel+ +yL +k++g+++  + +i e ++y+++P++L  k++k +e +wyf s+r++ky++gkr++r+t    g+Wk +tg d + ++ 
  Brast04G010800.1.p   2 PKDEELIRYYLLPKLQGRQHVPNPAIIEDNVYQCHPNKLIaKHAKRGEGSWYFLSPRERKYEHGKRPSRKTGdrLGRWKaSTGMDSATVKD 92 
                         9******************8776789999**********8456666777********************9875579***668888877775 PP

                 NAM  96 ...kgel......................vglkktLvfykgrapkgektdWvmheyr 127
                            +  +                      v   ++L +++g+ ++ +kt+W+mhe +
  Brast04G010800.1.p  93 ssaR--DgtvkesstgdgtvkksstsdgiVYNERVLGYFRGTVKEEKKTKWLMHELT 147
                         4550..15556677788888888999999999***********************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.9131176IPR003441NAC domain
SuperFamilySSF1019411.96E-26280IPR003441NAC domain
PfamPF023651.1E-112147IPR003441NAC domain
SuperFamilySSF1019411.96E-26119176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MPKDEELIRY YLLPKLQGRQ HVPNPAIIED NVYQCHPNKL IAKHAKRGEG SWYFLSPRER  60
KYEHGKRPSR KTGDRLGRWK ASTGMDSATV KDSSARDGTV KESSTGDGTV KKSSTSDGIV  120
YNERVLGYFR GTVKEEKKTK WLMHELTVPK FEKKLDENGG VNSTLDDYVM CKIYVTPRKK  180
GRDDDEAGPS CPTGLSESPS GTSSVHDQLG HPSKLSEKAA GKRLVFERQP PCRDAHAATI  240
ANAVKRARQG LQFGPRAQQV PTQARPTQAP LGGHAAGRPM AMSGRPRAPM PMPMPMSAGF  300
RGQAPRRPPG YLGQAAAPMG YHPGGQAPRP QPAGHRGQAP VPFIGQAQQA MATMRPSCPA  360
PAAGQAATPP SASRPPPPEQ QQQKQKQPET EEMKKARVIR QHLEEYFRLG HQGLLPSSMW  420
PPPCFAAQQQ CPITAFAEQQ QPQRPAMPFT QQQQQRPPMA FTQQQQQPTM AFTQQQQQQQ  480
PPMAFTHQQQ PYFVPNVVNQ HDPGMAGGTL PQFRLDNFYA SEAAGEFQGC SWEPMVLATG  540
DSAGAAAPAS VLLPRAGNEG NGAQDGDEKR LVEPGSPAKA SPAGSASAGG EDDDSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-14217425163NO APICAL MERISTEM PROTEIN
1ut4_B2e-14217425163NO APICAL MERISTEM PROTEIN
1ut7_A2e-14217425163NO APICAL MERISTEM PROTEIN
1ut7_B2e-14217425163NO APICAL MERISTEM PROTEIN
3swm_A2e-14217428166NAC domain-containing protein 19
3swm_B2e-14217428166NAC domain-containing protein 19
3swm_C2e-14217428166NAC domain-containing protein 19
3swm_D2e-14217428166NAC domain-containing protein 19
3swp_A2e-14217428166NAC domain-containing protein 19
3swp_B2e-14217428166NAC domain-containing protein 19
3swp_C2e-14217428166NAC domain-containing protein 19
3swp_D2e-14217428166NAC domain-containing protein 19
4dul_A2e-14217425163NAC domain-containing protein 19
4dul_B2e-14217425163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236909.10.0PREDICTED: uncharacterized protein LOC104584324
TrEMBLA0A0Q3FSJ20.0A0A0Q3FSJ2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.15e-21NAC family protein